If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 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'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ), 'gf_id' => 'HOM05D000624', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000624' ), 'data_identifier' => 'HOM05D000624', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000624', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '915', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19560' => 'bna', 'A04p01760' => 'bna', 'A04p16030' => 'bna', 'A06p48840' => 'bna', 'A07p25020' => 'bna', 'A08p23940' => 'bna', 'A08p31870' => 'bna', 'A09p52510' => 'bna', 'A09p61920' => 'bna', 'Aa31LG1G420' => 'aar', 'Aa31LG2G7980' => 'aar', 'Aa31LG6G16340' => 'aar', 'Aa31LG7G15240' => 'aar', 'Aa31LG9G12620' => 'aar', 'Aa31LG9G15600' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5968' => 'aag', 'Actinidia01338' => 'ach', 'Actinidia06840' => 'ach', 'Actinidia11789' => 'ach', 'Actinidia14765' => 'ach', 'Actinidia15396' => 'ach', 'Actinidia17456' => 'ach', 'Actinidia20474' => 'ach', 'Actinidia22994' => 'ach', 'Actinidia28218' => 'ach', 'Actinidia28219' => 'ach', 'Actinidia29792' => 'ach', 'Actinidia31005' => 'ach', 'Actinidia37975' => 'ach', 'Ah.01g018680' => 'amhyb', 'Ah.07g201120' => 'amhyb', 'Ah.10g031790' => 'amhyb', 'Ah.10g031800' => 'amhyb', 'Ah.12g055720' => 'amhyb', 'Ah.16g108670' => 'amhyb', 'AL1G26660' => 'aly', 'AL2G26790' => 'aly', 'AL4G10380' => 'aly', 'AL4G31600' => 'aly', 'AL5G11070' => 'aly', 'AL7G10800' => 'aly', 'AL8G18800' => 'aly', 'Aqoxy3G02116' => 'aox', 'Aqoxy3G04000' => 'aox', 'Aqoxy5G01469' => 'aox', 'Aqoxy6G02331' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4U6NMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ8TCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH24MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E4SR7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4ZNT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4CT7A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SIF6YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZM64J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UG7PEX' => 'arhy', 'AT1G14685' => 'ath', 'AT1G68120' => 'ath', 'AT2G01930' => 'ath', 'AT2G21240' => 'ath', 'AT2G35550' => 'ath', 'AT4G38910' => 'ath', 'AT5G42520' => 'ath', 'ATR0147G015' => 'atr', 'ATR0147G019' => 'atr', 'ATR0598G308' => 'atr', 'ATR0691G153' => 'atr', 'Atru.chr11.999' => 'acertr', 'Atru.chr13.337' => 'acertr', 'Atru.chr5.3160' => 'acertr', 'Atru.chr5.3172' => 'acertr', 'Atru.chr6.1570' => 'acertr', 'AUR62007377' => 'cqu', 'AUR62010370' => 'cqu', 'AUR62010371' => 'cqu', 'AUR62010372' => 'cqu', 'AUR62014407' => 'cqu', 'AUR62016847' => 'cqu', 'AUR62018611' => 'cqu', 'AUR62019144' => 'cqu', 'AUR62041589' => 'cqu', 'AUR62043095' => 'cqu', 'BcaB02g06541' => 'bca', 'BcaB02g07426' => 'bca', 'BcaB02g08184' => 'bca', 'BcaB03g12232' => 'bca', 'BcaB05g24341' => 'bca', 'BcaB08g34976' => 'bca', 'BcaC01g00264' => 'bca', 'BcaC01g05726' => 'bca', 'BcaC02g08806' => 'bca', 'BcaC02g10140' => 'bca', 'BcaC03g14908' => 'bca', 'BcaC05g25388' => 'bca', 'BcaC07g38752' => 'bca', 'BcaC07g40418' => 'bca', 'BcaC07g40511' => 'bca', 'BcaC07g41162' => 'bca', 'BcaC07g41163' => 'bca', 'BcaC07g41550' => 'bca', 'BcaC08g45042' => 'bca', 'BcaNung01295' => 'bca', 'BcaNung01956' => 'bca', 'BolC1t00023H' => 'bol', 'BolC2t08522H' => 'bol', 'BolC3t14679H' => 'bol', 'BolC3t19996H' => 'bol', 'BolC4t24789H' => 'bol', 'BolC4t26643H' => 'bol', 'BolC5t30008H' => 'bol', 'BolC6t37824H' => 'bol', 'BolC7t46764H' => 'bol', 'BolC8t49304H' => 'bol', 'BolC8t51121H' => 'bol', 'BolC8t52105H' => 'bol', 'BraA03t11209Z' => 'bra', 'BraA04t15900Z' => 'bra', 'BraA06t27752Z' => 'bra', 'BraA07t30142Z' => 'bra', 'BraA08t34352Z' => 'bra', 'BraA08t35109Z' => 'bra', 'BraA09t40682Z' => 'bra', 'BraA09t41557Z' => 'bra', 'C01p00180' => 'bna', 'C02p23870' => 'bna', 'C03p22800' => 'bna', 'C03p77400' => 'bna', 'C04p32410' => 'bna', 'C04p50460' => 'bna', 'C06p26630' => 'bna', 'C07p63500' => 'bna', 'C08p16830' => 'bna', 'C08p35270' => 'bna', 'C08p41700' => 'bna', 'C08p45530' => 'bna', 'CAN.G108.3' => 'can', 'CAN.G1271.6' => 'can', 'CAN.G1611.10' => 'can', 'CAN.G170.109' => 'can', 'CAN.G1828.1' => 'can', 'CAN.G27.23' => 'can', 'CAN.G458.26' => 'can', 'CAN.G65.85' => 'can', 'CAN.G773.19' => 'can', 'CAN.G900.54' => 'can', 'CANSAT11G2086' => 'cansat', 'CANSAT25G0271' => 'cansat', 'CANSAT78G2355' => 'cansat', 'CARHR015190' => 'chi', 'CARHR060790' => 'chi', 'CARHR112110' => 'chi', 'CARHR129720' => 'chi', 'CARHR144540' => 'chi', 'CARHR181860' => 'chi', 'CARHR247850' => 'chi', 'Carub.0001s1445' => 'cru', 'Carub.0002s1460' => 'cru', 'Carub.0004s0029' => 'cru', 'Carub.0004s1724' => 'cru', 'Carub.0005s0095' => 'cru', 'Carub.0008s0649' => 'cru', 'Ca_13398_v3' => 'car', 'Ca_17576_v3' => 'car', 'Ca_20290_v3' => 'car', 'Ca_29825_v3' => 'car', 'Cc02_g16840' => 'ccan', 'Cc04_g09150' => 'ccan', 'Cc07_g10550' => 'ccan', 'Cc08_g03970' => 'ccan', 'Cc10_g01980' => 'ccan', 'Cc11_g05650' => 'ccan', 'CDE05G0138' => 'cde', 'CDE05G1316' => 'cde', 'CDE05G1964' => 'cde', 'CDE05G2790' => 'cde', 'CDE05G3502' => 'cde', 'CDE11G1223' => 'cde', 'Cfa005120' => 'cfa', 'Cfa020660' => 'cfa', 'Ciclev10001400m.g' => 'ccl', 'Ciclev10015354m.g' => 'ccl', 'Ciclev10028887m.g' => 'ccl', 'CiPaw.05G074100' => 'cil', 'CiPaw.05G159000' => 'cil', 'CiPaw.06G058300' => 'cil', 'CiPaw.06G127500' => 'cil', 'CiPaw.07G153000' => 'cil', 'CiPaw.08G063900' => 'cil', 'CiPaw.11G101000' => 'cil', 'CiPaw.12G070100' => 'cil', 'CiPaw.14G048100' => 'cil', 'CiPaw.15G149300' => 'cil', 'ClCG01G006800' => 'cla', 'ClCG02G004470' => 'cla', 'ClCG08G014430' => 'cla', 'COL.COLO4_10618' => 'col', 'COL.COLO4_16897' => 'col', 'COL.COLO4_26178' => 'col', 'COL.COLO4_27570' => 'col', 'Cpa.g.c45420' => 'cpa', 'Cpa.g.sc150.9' => 'cpa', 'Cpa.g.sc2.121' => 'cpa', 'CsaV3_2G029370' => 'csa', 'CsaV3_5G017130' => 'csa', 'CsaV3_5G017140' => 'csa', 'CsaV3_7G000490' => 'csa', 'CSS0004712' => 'camsi', 'CSS0007067' => 'camsi', 'CSS0008658' => 'camsi', 'CSS0008708' => 'camsi', 'CSS0010668' => 'camsi', 'CSS0012483' => 'camsi', 'CSS0013265' => 'camsi', 'CSS0015997' => 'camsi', 'CSS0023355' => 'camsi', 'CSS0030018' => 'camsi', 'CSS0044373' => 'camsi', 'CSS0047856' => 'camsi', 'DCAR_003687' => 'dca', 'DCAR_004170' => 'dca', 'DCAR_017498' => 'dca', 'DCAR_021496' => 'dca', 'DCAR_023538' => 'dca', 'DCAR_026825' => 'dca', 'Dinv08893' => 'din', 'Dinv08895' => 'din', 'Dinv20499' => 'din', 'Dinv20501' => 'din', 'Dinv20540' => 'din', 'Dinv20542' => 'din', 'Dinv23448' => 'din', 'Dinv31820' => 'din', 'Dinv33613' => 'din', 'Dinv40069' => 'din', 'Dinv41991' => 'din', 'Duzib041G0420' => 'dzi', 'Duzib052G1043' => 'dzi', 'Duzib068G0246' => 'dzi', 'Duzib093G1191' => 'dzi', 'Duzib116G0679' => 'dzi', 'Duzib132G0176' => 'dzi', 'Duzib205G1836' => 'dzi', 'Duzib248G0096' => 'dzi', 'Duzib248G0498' => 'dzi', 'Duzib251G0478' => 'dzi', 'Duzib268G1300' => 'dzi', 'ECA233G1085' => 'eca', 'ECA233G3354' => 'eca', 'ECA233G6068' => 'eca', 'ECA234G1999' => 'eca', 'ECA246G4537' => 'eca', 'EL10Ac1g00451' => 'bvu', 'EL10Ac5g11980' => 'bvu', 'EL10Ac6g14031' => 'bvu', 'EL10Ac9g21622' => 'bvu', 'Eucgr.D01054' => 'egr', 'Eucgr.E01260' => 'egr', 'Eucgr.G02067' => 'egr', 'Eucgr.H00573' => 'egr', 'Eucgr.I01334' => 'egr', 'FAN07G2262' => 'fan', 'FAN12G2196' => 'fan', 'FAN13G2836' => 'fan', 'FAN15G1283' => 'fan', 'FAN15G2180' => 'fan', 'FAN17G2011' => 'fan', 'FAN20G0285' => 'fan', 'FAN20G1100' => 'fan', 'FAN22G1501' => 'fan', 'FAN24G3380' => 'fan', 'FAN27G2582' => 'fan', 'FAN27G3222' => 'fan', 'FvH4_2g10650' => 'fve', 'FvH4_2g38840' => 'fve', 'FvH4_4g35810' => 'fve', 'Glyma.04G026300' => 'gma', 'Glyma.05G137100' => 'gma', 'Glyma.05G201900' => 'gma', 'Glyma.06G026100' => 'gma', 'Glyma.07G107300' => 'gma', 'Glyma.07G107400' => 'gma', 'Glyma.08G009300' => 'gma', 'Glyma.08G092400' => 'gma', 'Glyma.09G170300' => 'gma', 'Glyma.09G170400' => 'gma', 'Gohir.A01G112800' => 'ghi', 'Gohir.A01G143100' => 'ghi', 'Gohir.A03G113332' => 'ghi', 'Gohir.A04G143400' => 'ghi', 'Gohir.A04G143500' => 'ghi', 'Gohir.A08G152450' => 'ghi', 'Gohir.A12G204500' => 'ghi', 'Gohir.A13G086445' => 'ghi', 'Gohir.D01G101100' => 'ghi', 'Gohir.D01G135000' => 'ghi', 'Gohir.D02G137700' => 'ghi', 'Gohir.D04G187002' => 'ghi', 'Gohir.D04G187800' => 'ghi', 'Gohir.D08G173450' => 'ghi', 'Gohir.D12G206900' => 'ghi', 'Gohir.D13G091000' => 'ghi', 'Gorai.001G243700' => 'gra', 'Gorai.002G124900' => 'gra', 'Gorai.002G171200' => 'gra', 'Gorai.004G181000' => 'gra', 'Gorai.005G154200' => 'gra', 'Gorai.008G222300' => 'gra', 'Gorai.012G183100' => 'gra', 'Gorai.012G183200' => 'gra', 'GSVIVG01009844001' => 'vvi', 'GSVIVG01009845001' => 'vvi', 'GSVIVG01011589001' => 'vvi', 'GSVIVG01024162001' => 'vvi', 'HanXRQChr05g0140871' => 'han', 'HanXRQChr08g0224301' => 'han', 'HanXRQChr12g0366051' => 'han', 'HanXRQChr15g0475861' => 'han', 'HanXRQChr16g0531041' => 'han', 'HanXRQChr17g0556471' => 'han', 'HanXRQChr17g0566301' => 'han', 'Haze_02229' => 'cav', 'Haze_10804' => 'cav', 'Haze_18952' => 'cav', 'Haze_22602' => 'cav', 'Hma1.2p1_0032F.1_g020040' => 'hma', 'Hma1.2p1_0066F.1_g035720' => 'hma', 'Hma1.2p1_0743F.1_g211543' => 'hma', 'Hma1.2p1_0773F.1_g216250' => 'hma', 'Hma1.2p1_0803F.1_g220680' => 'hma', 'Hma1.2p1_1137F.1_g260660' => 'hma', 'Hma1.2p1_2281F.1_g318740' => 'hma', 'Hma1.2p1_2281F.1_g318750' => 'hma', 'HPP92_003436' => 'vpl', 'HPP92_009508' => 'vpl', 'HPP92_016409' => 'vpl', 'HPP92_016410' => 'vpl', 'HPP92_026202' => 'vpl', 'Hund06288' => 'sun', 'Hund06733' => 'sun', 'Hund17230' => 'sun', 'Hund26861' => 'sun', 'Lalb_Chr07g0183681' => 'lal', 'Lalb_Chr07g0187961' => 'lal', 'Lalb_Chr08g0246101' => 'lal', 'Lalb_Chr11g0062031' => 'lal', 'Lalb_Chr12g0209291' => 'lal', 'Lalb_Chr13g0292451' => 'lal', 'Lalb_Chr13g0297081' => 'lal', 'Lalb_Chr14g0370461' => 'lal', 'Lalb_Chr16g0386901' => 'lal', 'Lalb_Chr22g0353641' => 'lal', 'Lalb_Chr23g0266271' => 'lal', 'Lj1g0023499' => 'lja', 'Lj2C465T10' => 'lonja', 'Lj2g0007138' => 'lja', 'Lj3P859T20' => 'lonja', 'Lj4g0014751' => 'lja', 'Lj4g0017365' => 'lja', 'Lj4P217T24' => 'lonja', 'Lj4P793T15' => 'lonja', 'Lj5P163T64' => 'lonja', 'Lj5P188T33' => 'lonja', 'Lj6P731T21' => 'lonja', 'Lsat_1_v5_gn_3_61240' => 'lsa', 'Lsat_1_v5_gn_3_73960' => 'lsa', 'Lsat_1_v5_gn_4_17781' => 'lsa', 'Lsat_1_v5_gn_4_22580' => 'lsa', 'Lsat_1_v5_gn_5_26240' => 'lsa', 'Lsat_1_v5_gn_6_17761' => 'lsa', 'Lsat_1_v5_gn_8_127060' => 'lsa', 'Lsat_1_v5_gn_8_34460' => 'lsa', 'Manes.04G082700' => 'mes', 'Manes.05G151500' => 'mes', 'Manes.11G081400' => 'mes', 'Manes.15G139000' => 'mes', 'Manes.17G006637' => 'mes', 'Manes.17G089900' => 'mes', 'Mapoly0018s0011' => 'mpo', 'MapolyY_B0017' => 'mpo', 'MBI04_g36022_MAGBIO' => 'mbi', 'MBI05_g22044_MAGBIO' => 'mbi', 'MBI05_g39815_MAGBIO' => 'mbi', 'MBI07_g22862_MAGBIO' => 'mbi', 'MBI13_g21688_MAGBIO' => 'mbi', 'MD05G1054600' => 'mdo', 'MD08G1016400' => 'mdo', 'MD10G1062100' => 'mdo', 'MD13G1015100' => 'mdo', 'MD15G1015400' => 'mdo', 'MD16G1012800' => 'mdo', 'Medtr1g023660' => 'mtr', 'Medtr2g035730' => 'mtr', 'Medtr8g099780' => 'mtr', 'MELO3C005238.2' => 'cme', 'MELO3C005239.2' => 'cme', 'MELO3C010996.2' => 'cme', 'MELO3C013409.2' => 'cme', 'Migut.B00488' => 'egut', 'Migut.D01205' => 'egut', 'Migut.E00567' => 'egut', 'Migut.H01143' => 'egut', 'Migut.N01298' => 'egut', 'Migut.N03139' => 'egut', 'MSTRG.13649' => 'ama', 'MSTRG.2104' => 'ama', 'MSTRG.22327' => 'ama', 'MSTRG.24258' => 'ama', 'MSTRG.2696' => 'ama', 'MSTRG.27661' => 'ama', 'Nitab4.5_0000033g0330' => 'nta', 'Nitab4.5_0000543g0140' => 'nta', 'Nitab4.5_0000926g0010' => 'nta', 'Nitab4.5_0001242g0050' => 'nta', 'Nitab4.5_0004049g0010' => 'nta', 'Nitab4.5_0004254g0020' => 'nta', 'Nitab4.5_0005185g0020' => 'nta', 'Nitab4.5_0005266g0030' => 'nta', 'Nitab4.5_0005489g0030' => 'nta', 'Nitab4.5_0005721g0080' => 'nta', 'Nitab4.5_0006395g0020' => 'nta', 'Nitab4.5_0008276g0010' => 'nta', 'Nitab4.5_0011855g0020' => 'nta', 'Nn1g01917' => 'nnu', 'Nn3g18477' => 'nnu', 'Nn4g24570' => 'nnu', 'Nn5g29258' => 'nnu', 'Nn6g32267' => 'nnu', 'Oeu006315.1' => 'oeu', 'Oeu007935.1' => 'oeu', 'Oeu007937.1' => 'oeu', 'Oeu024516.1' => 'oeu', 'Oeu027564.2' => 'oeu', 'Oeu032150.1' => 'oeu', 'Oeu034668.1' => 'oeu', 'Oeu035300.1' => 'oeu', 'Oeu039176.1' => 'oeu', 'Oeu043966.1' => 'oeu', 'Oeu044086.1' => 'oeu', 'Oeu046250.1' => 'oeu', 'Oeu060414.1' => 'oeu', 'Oeu062507.1' => 'oeu', 'Oeu062666.1' => 'oeu', 'Os03g0237401' => 'osa', 'Os06g0130600' => 'osa', 'Os10g0114500' => 'osa', 'Os10g0115200' => 'osa', 'Os10g0115500' => 'osa', 'Peaxi162Scf00016g00005' => 'pax', 'Peaxi162Scf00083g00087' => 'pax', 'Peaxi162Scf00186g00011' => 'pax', 'Peaxi162Scf00287g01628' => 'pax', 'Peaxi162Scf00337g00011' => 'pax', 'Peaxi162Scf00643g00612' => 'pax', 'Peaxi162Scf00879g00003' => 'pax', 'PGR031G2552' => 'pgr', 'PGR042G0039' => 'pgr', 'PGR083G0872' => 'pgr', 'PGR142G1932' => 'pgr', 'PGR142G2865' => 'pgr', 'PGSC0003DMG400001660' => 'stu', 'PGSC0003DMG400003553' => 'stu', 'PGSC0003DMG400003719' => 'stu', 'PGSC0003DMG400009292' => 'stu', 'PGSC0003DMG400026958' => 'stu', 'PGSC0003DMG402029444' => 'stu', 'Phvul.002G184500' => 'pvu', 'Phvul.002G283200' => 'pvu', 'Phvul.004G146000' => 'pvu', 'Phvul.004G146100' => 'pvu', 'Phvul.009G015000' => 'pvu', 'Potri.001G133900' => 'ptr', 'Potri.002G026700' => 'ptr', 'Potri.004G163700' => 'ptr', 'Potri.005G235900' => 'ptr', 'Potri.008G140200' => 'ptr', 'Potri.009G125300' => 'ptr', 'Potri.010G101400' => 'ptr', 'Potri.012G040600' => 'ptr', 'Potri.012G040700' => 'ptr', 'Potri.012G040800' => 'ptr', 'Potri.015G032800' => 'ptr', 'Potri.015G032900' => 'ptr', 'Potri.015G033000' => 'ptr', 'Prupe.1G338500' => 'ppe', 'Prupe.1G369400' => 'ppe', 'Prupe.8G082900' => 'ppe', 'Psat0s2489g0040' => 'psa', 'Psat0s348g0040' => 'psa', 'Psat0s3992g0040' => 'psa', 'Psat1g115040' => 'psa', 'Psat3g138000' => 'psa', 'Psat5g034760' => 'psa', 'Psat6g102880' => 'psa', 'Psat7g037920' => 'psa', 'Psat7g085480' => 'psa', 'PSO017G3524' => 'pso', 'PSO063G7427' => 'pso', 'PSO478G3932' => 'pso', 'PSO541G6429' => 'pso', 'PSO675G6971' => 'pso', 'PSO782G0201' => 'pso', 'QL02p010920' => 'qlo', 'QL03p039222' => 'qlo', 'QL06p033679' => 'qlo', 'QL10p033513' => 'qlo', 'QL10p033587' => 'qlo', 'QL11p046585' => 'qlo', 'QL12p000328' => 'qlo', 'RcHm_v2.0_Chr4g0445341' => 'rch', 'RcHm_v2.0_Chr6g0268351' => 'rch', 'RcHm_v2.0_Chr6g0302391' => 'rch', 'Rhsim05G0067800' => 'rsi', 'Rhsim06G0025500' => 'rsi', 'Rhsim07G0135000' => 'rsi', 'Rhsim07G0245500' => 'rsi', 'Rhsim09G0084800' => 'rsi', 'Rhsim10G0213600' => 'rsi', 'Rhsim11G0184300' => 'rsi', 'RhsimUnG0148400' => 'rsi', 'Sabra02G0021000' => 'sbr', 'Sabra04G0109900' => 'sbr', 'Sabra08G0106300' => 'sbr', 'Sabra09G0096300' => 'sbr', 'Sabra10G0074100' => 'sbr', 'Sabra12G0028100' => 'sbr', 'Sabra15G0027000' => 'sbr', 'Sabra15G0027100' => 'sbr', 'SalBow1G4698' => 'sbo', 'SalBow2G0344' => 'sbo', 'SalBow3G0065' => 'sbo', 'SalBow3G2499' => 'sbo', 'Sc02g0005140' => 'sci', 'Sc07g0008430' => 'sci', 'Sc10g0008980' => 'sci', 'Sc12g0008030' => 'sci', 'Sc22g0001950' => 'sci', 'Sed0000405' => 'sed', 'Sed0002177' => 'sed', 'Sed0005737' => 'sed', 'Sed0006417' => 'sed', 'Sed0009322' => 'sed', 'Sed0021954' => 'sed', 'Sed0024695' => 'sed', 'SEGI_02606' => 'sgi', 'SEGI_33081' => 'sgi', 'SGA_v2.0_scaffold23G10086' => 'sas', 'SGA_v2.0_scaffold40G15657' => 'sas', 'SGA_v2.0_scaffold58G20429' => 'sas', 'SGA_v2.0_scaffold74G24676' => 'sas', 'SGA_v2.0_scaffold92G28271' => 'sas', 'SHI00140' => 'shi', 'SHI00989' => 'shi', 'SHI03000' => 'shi', 'SHI03004' => 'shi', 'SHI04213' => 'shi', 'SHI04451' => 'shi', 'SHI04452' => 'shi', 'SHI04952' => 'shi', 'SHI05209' => 'shi', 'SHI07062' => 'shi', 'SHI07728' => 'shi', 'SHI07729' => 'shi', 'SHI07870' => 'shi', 'SHI08088' => 'shi', 'SHI12334' => 'shi', 'SHI14226' => 'shi', 'SHI14227' => 'shi', 'SHI14838' => 'shi', 'SHI15500' => 'shi', 'SHI15501' => 'shi', 'SHI15704' => 'shi', 'SHI15743' => 'shi', 'SHI15998' => 'shi', 'SHI16114' => 'shi', 'SHI17168' => 'shi', 'SHI17620' => 'shi', 'SHI17657' => 'shi', 'SHI17690' => 'shi', 'SHI17792' => 'shi', 'SHI19430' => 'shi', 'SHI19875' => 'shi', 'SHI19938' => 'shi', 'SHI19940' => 'shi', 'SHI19947' => 'shi', 'SHI19952' => 'shi', 'SHI19969' => 'shi', 'SHI20324' => 'shi', 'SHI20742' => 'shi', 'SHI20799' => 'shi', 'SHI20807' => 'shi', 'SHI20840' => 'shi', 'SHI20997' => 'shi', 'SHI21845' => 'shi', 'SHI21846' => 'shi', 'SHI21918' => 'shi', 'SHI22366' => 'shi', 'SHI22460' => 'shi', 'SHI22461' => 'shi', 'SHI22855' => 'shi', 'SHI23195' => 'shi', 'SHI23626' => 'shi', 'SHI23854' => 'shi', 'SHI23855' => 'shi', 'SHI24677' => 'shi', 'SHI24678' => 'shi', 'SHI24782' => 'shi', 'SHI24783' => 'shi', 'SHI24980' => 'shi', 'SHI24981' => 'shi', 'SHI26945' => 'shi', 'SHI27267' => 'shi', 'SHI27286' => 'shi', 'SHI27290' => 'shi', 'SHI28430' => 'shi', 'SHI28431' => 'shi', 'SHI29247' => 'shi', 'SHI29337' => 'shi', 'SHI29341' => 'shi', 'SHI29342' => 'shi', 'SHI29409' => 'shi', 'SHI29410' => 'shi', 'SHI29574' => 'shi', 'SHI29575' => 'shi', 'SHI29703' => 'shi', 'SHI29824' => 'shi', 'SHI29850' => 'shi', 'SHI29973' => 'shi', 'SHI30584' => 'shi', 'SHI30974' => 'shi', 'SHI31246' => 'shi', 'SHI31432' => 'shi', 'SHI31433' => 'shi', 'SHI31627' => 'shi', 'SHI31629' => 'shi', 'SHI32181' => 'shi', 'SHI32182' => 'shi', 'SHI32525' => 'shi', 'SHI32949' => 'shi', 'SHI32983' => 'shi', 'SHI33136' => 'shi', 'SHI33259' => 'shi', 'SHI33293' => 'shi', 'SHI33297' => 'shi', 'SHI33594' => 'shi', 'SHI33851' => 'shi', 'SHI33852' => 'shi', 'SHI34600' => 'shi', 'SHI34957' => 'shi', 'SHI35007' => 'shi', 'SHI35059' => 'shi', 'SHI35117' => 'shi', 'SHI35130' => 'shi', 'SHI35143' => 'shi', 'SHI35144' => 'shi', 'SHI35174' => 'shi', 'SHI35282' => 'shi', 'SHI35283' => 'shi', 'SHI35382' => 'shi', 'SHI35383' => 'shi', 'SHI35388' => 'shi', 'SHI35389' => 'shi', 'SHI35575' => 'shi', 'SHI35581' => 'shi', 'SHI35602' => 'shi', 'SHI35988' => 'shi', 'SHI36150' => 'shi', 'SHI36391' => 'shi', 'SHI36810' => 'shi', 'SHI36870' => 'shi', 'SHI37002' => 'shi', 'SHI37019' => 'shi', 'SHI37043' => 'shi', 'SHI37044' => 'shi', 'SHI37304' => 'shi', 'SHI37412' => 'shi', 'SHI37639' => 'shi', 'SHI37643' => 'shi', 'SHI37644' => 'shi', 'SHI37753' => 'shi', 'SHI37757' => 'shi', 'SHI37758' => 'shi', 'SHI37979' => 'shi', 'SHI37980' => 'shi', 'SHI38004' => 'shi', 'SHI38063' => 'shi', 'SHI39345' => 'shi', 'SHI40290' => 'shi', 'SHI40829' => 'shi', 'SHI40830' => 'shi', 'SHI40833' => 'shi', 'SHI41845' => 'shi', 'SHI41846' => 'shi', 'SHI41899' => 'shi', 'SHI41900' => 'shi', 'SHI41947' => 'shi', 'SHI42295' => 'shi', 'SHI42624' => 'shi', 'SHI42682' => 'shi', 'SHI43222' => 'shi', 'SHI43437' => 'shi', 'SHI43496' => 'shi', 'SHI43714' => 'shi', 'SHI43715' => 'shi', 'SHI43985' => 'shi', 'SHI44011' => 'shi', 'SHI44148' => 'shi', 'SHI44181' => 'shi', 'SHI44213' => 'shi', 'SHI44214' => 'shi', 'SHI44511' => 'shi', 'SHI44727' => 'shi', 'SHI44953' => 'shi', 'SHI45044' => 'shi', 'SHI45122' => 'shi', 'SHI45401' => 'shi', 'SHI45605' => 'shi', 'SHI45616' => 'shi', 'SHI45617' => 'shi', 'SHI45836' => 'shi', 'SHI45920' => 'shi', 'SHI45921' => 'shi', 'SHI46337' => 'shi', 'SHI46387' => 'shi', 'SHI46394' => 'shi', 'SHI46414' => 'shi', 'SHI46415' => 'shi', 'SHI46557' => 'shi', 'SHI46568' => 'shi', 'SHI46569' => 'shi', 'SHI46574' => 'shi', 'SHI46779' => 'shi', 'SHI46917' => 'shi', 'SHI46955' => 'shi', 'SHI47145' => 'shi', 'SHI47250' => 'shi', 'SHI47423' => 'shi', 'SHI47457' => 'shi', 'SHI47542' => 'shi', 'SHI47583' => 'shi', 'SHI47878' => 'shi', 'SHI47896' => 'shi', 'SHI47897' => 'shi', 'SHI47901' => 'shi', 'SHI47955' => 'shi', 'SHI47988' => 'shi', 'SHI48294' => 'shi', 'SHI48397' => 'shi', 'SHI48517' => 'shi', 'SHI48869' => 'shi', 'SHI48952' => 'shi', 'SHI48985' => 'shi', 'SHI49095' => 'shi', 'SHI49166' => 'shi', 'SHI49173' => 'shi', 'SHI49266' => 'shi', 'SHI49364' => 'shi', 'SHI49365' => 'shi', 'SHI49473' => 'shi', 'SHI49474' => 'shi', 'SHI49502' => 'shi', 'SHI49503' => 'shi', 'SHI49863' => 'shi', 'SHI50151' => 'shi', 'SHI50173' => 'shi', 'SHI50174' => 'shi', 'SHI50207' => 'shi', 'SHI50212' => 'shi', 'SHI50271' => 'shi', 'SHI50272' => 'shi', 'SHI50358' => 'shi', 'SHI50482' => 'shi', 'SHI50521' => 'shi', 'SHI50526' => 'shi', 'SHI50574' => 'shi', 'SHI50605' => 'shi', 'SHI50813' => 'shi', 'SHI50841' => 'shi', 'SHI50952' => 'shi', 'SHI51083' => 'shi', 'SHI51099' => 'shi', 'SHI51118' => 'shi', 'SHI51173' => 'shi', 'SHI51244' => 'shi', 'SHI51279' => 'shi', 'SHI51342' => 'shi', 'SHI51369' => 'shi', 'SHI51492' => 'shi', 'SHI51579' => 'shi', 'SHI51791' => 'shi', 'SHI51826' => 'shi', 'SHI52050' => 'shi', 'SHI52067' => 'shi', 'SHI52102' => 'shi', 'SHI52568' => 'shi', 'SHI52793' => 'shi', 'SHI52827' => 'shi', 'SHI52830' => 'shi', 'SHI52977' => 'shi', 'SHI53120' => 'shi', 'SHI53135' => 'shi', 'SHI53159' => 'shi', 'SHI53229' => 'shi', 'SHI53315' => 'shi', 'SHI53324' => 'shi', 'SHI53325' => 'shi', 'SHI53336' => 'shi', 'SHI53396' => 'shi', 'SHI53414' => 'shi', 'SHI53529' => 'shi', 'SHI53618' => 'shi', 'SHI53747' => 'shi', 'SHI53772' => 'shi', 'SHI53816' => 'shi', 'SHI53858' => 'shi', 'SHI53909' => 'shi', 'SHI54002' => 'shi', 'SHI54035' => 'shi', 'SHI54074' => 'shi', 'SHI54075' => 'shi', 'SHI54121' => 'shi', 'SHI54146' => 'shi', 'SHI54178' => 'shi', 'SHI54181' => 'shi', 'SHI54227' => 'shi', 'SHI54254' => 'shi', 'SHI54275' => 'shi', 'SHI54818' => 'shi', 'SHI54924' => 'shi', 'SHI54936' => 'shi', 'SHI54959' => 'shi', 'SHI55019' => 'shi', 'SHI55248' => 'shi', 'SMO116G0271' => 'smo', 'Solyc01g110470.3' => 'sly', 'Solyc02g084230.3' => 'sly', 'Solyc04g008380.4' => 'sly', 'Solyc04g081170.3' => 'sly', 'Solyc06g072370.3' => 'sly', 'Solyc08g076230.1' => 'sly', 'Sopen01g052600' => 'spe', 'Sopen02g028970' => 'spe', 'Sopen04g003530' => 'spe', 'Sopen04g034790' => 'spe', 'Sopen06g028740' => 'spe', 'Sopen08g024870' => 'spe', 'Sp1g13070' => 'spa', 'Sp2g13370' => 'spa', 'Sp4g00440' => 'spa', 'Sp4g17770' => 'spa', 'Sp5g02970' => 'spa', 'Sp5g23120' => 'spa', 'Sp7g36930' => 'spa', 'TAR371G0833' => 'tar', 'TAR374G0789' => 'tar', 'TAR376G1144' => 'tar', 'TAR381G1604' => 'tar', 'TAR622G0343' => 'tar', 'TAR625G0325' => 'tar', 'TAR629G1809' => 'tar', 'THA.LOC104798501' => 'tha', 'THA.LOC104804108' => 'tha', 'THA.LOC104805101' => 'tha', 'THA.LOC104806904' => 'tha', 'THA.LOC104807776' => 'tha', 'THA.LOC104812731' => 'tha', 'THA.LOC104813191' => 'tha', 'THA.LOC104824100' => 'tha', 'THA.LOC104824115' => 'tha', 'THA.LOC104824787' => 'tha', 'Thecc.02G073700' => 'tca', 'Thecc.02G303000' => 'tca', 'Thecc.03G313900' => 'tca', 'Thecc.08G039100' => 'tca', 'Thhalv10000273m.g' => 'esa', 'Thhalv10005342m.g' => 'esa', 'Thhalv10006075m.g' => 'esa', 'Thhalv10008428m.g' => 'esa', 'Thhalv10017196m.g' => 'esa', 'Thhalv10018977m.g' => 'esa', 'Thhalv10025867m.g' => 'esa', 'TPR.G11932' => 'tpr', 'TPR.G12845' => 'tpr', 'TPR.G31702' => 'tpr', 'TPR.G34341' => 'tpr', 'TWI12G0097' => 'twi', 'TWI31G0617' => 'twi', 'TWI36G0097' => 'twi', 'TWI53G2059' => 'twi', 'TWI56G0039' => 'twi', 'TWI60G0505' => 'twi', 'TWI74G1352' => 'twi', 'TWI75G1242' => 'twi', 'TWI81G1002' => 'twi', 'unitig_26.g9367' => 'ugi', 'unitig_52.g17025' => 'ugi', 'unitig_52.g17041' => 'ugi', 'unitig_52.g17294' => 'ugi', 'unitig_62.g23752' => 'ugi', 'unitig_62.g23814' => 'ugi', 'unitig_62.g23815' => 'ugi', 'unitig_748.g7762' => 'ugi', 'unitig_749.g13645' => 'ugi', 'vmacro02048' => 'vma', 'vmacro04334' => 'vma', 'vmacro17414' => 'vma', 'vmacro21708' => 'vma', 'vmacro21913' => 'vma', 'vmacro22045' => 'vma', 'VMungo0251G1309' => 'vmu', 'VMungo0251G1960' => 'vmu', 'VMungo0464G0143' => 'vmu', 'VMungo1309G1951' => 'vmu', 'Zm00001eb036170' => 'zma', 'Zm00001eb094740' => 'zma', 'Zm00001eb174990' => 'zma', 'Zm00001eb378270' => 'zma' ) $gf_id = 'HOM05D000624' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000624' ) $data_identifier = 'HOM05D000624' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 3, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 11, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 13, 'ppe' => (int) 3, 'psa' => (int) 9, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 3, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 5, 'shi' => (int) 282, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 4, 'twi' => (int) 9, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378270' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1